Browsing by Author "Sharma, Pankaj Kumar"

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Anti-adipogenic and anti-steatotic potential of edible pigment bixin and annatto seed extracts: LC-MS based bioactive profiling and in vitro biochemical validation
(Elsevier, 2025-02) Sharma, Pankaj Kumar; Deepa, P.R.
The rising prevalence of metabolic syndrome (MetS), such as obesity and its hepatic complication, and non-alcoholic fatty liver disease (NAFLD), necessitates safe, effective, and protective interventions. Natural products, such as carotenoids, including bixin derived from annatto seeds, have emerged as promising candidates due to their multifaceted pharmacological properties. This study aimed to characterize the edible food pigment bixin and other co-existing bioactives in acetone- and ethyl lactate-extracts of Bixa Orellana L. seeds, followed by their anti-adipogenic and anti-steatotic assessments using in-vitro models of obesity and NAFLD. LC-MS analysis revealed the presence of various phytochemicals in the bixin rich solvent extracts. In vitro studies demonstrated differential and significant anti-adipogenic and anti-steatotic effects of bixin (pure pigment) and solvent extracts of annatto seeds (P < 0.05). The LC-MS profiling of annatto seed extracts revealed the presence of bixin and several bixinoids. Other key phytochemicals that were identified were eicosatrienoic acid, geranylgeraniol, hypolatein, δ-tocotrienol, caffeoyl acid derivative, and zeaxanthin, which were differentially abundant in each solvent extract. Bixin and coexisting bioactives in the annatto seed extracts demonstrated significant anti-oxidant, anti-inflammatory, and anti-lipidemic effects (P < 0.05) in the present in vitro MetS models. Further studies may be directed toward evaluating the nutraceutical potential of bixin in combination with the implicated phytochemicals in the extracts for treating metabolic disorders.
Anti-obesity and anti-steatotic effects of bixin (apocarotenoid from bixa orellana l. Seeds): dose-dependent correlations with bioactivity
(MDPI, 2024-12) Sharma, Pankaj Kumar; Deepa, P.R.
Annatto, a tropical shrub from Central and South America and parts of India, contains Bixin, an apocarotenoid pigment. Bixin is conventionally used as a natural food colorant and is now receiving attention for its health-promoting nutraceutical properties, particularly in chronic diseases (metabolic syndrome—MetS—and cancers). This study investigates the dose-dependent anti-obesity and anti-steatotic effects of Bixin in in vitro cell culture models. The anti-adipogenic and anti-steatotic effects of Bixin were examined in well-established in vitro models of obesity and non-alcoholic fatty liver disease (NAFLD/steatosis) using 3T3-L1 preadipocytes (by a differentiation protocol) and HepG2cells (steatosis-induced with oleic acid), respectively. Bixin was administered in the following concentration range: 1 μg mL−1–20 μg mL−1 (obesity model) and 2.5 μg mL−1–10 μg mL−1 (NAFLD/steatosis model). The neutral lipid content was estimated by Oil Red O staining; ROS/RNS were quantified by 2′,7′-dichlorofluorescein diacetate (DCFDA) and nitrite assays; and malondialdehyde (MDA), the biochemical marker of lipid peroxidation, was assessed by TBARS assay. At lower concentrations, 5 μg mL−1 in steatotic cells and 10 μg mL−1 in matured adipocytes, Bixin significantly reduced lipid accumulation in both hepatocytes and adipocytes (p < 0.05), demonstrating its potential as an anti-steatotic and anti-obesity agent. This beneficial effect was correlated with a reduction in oxidative stress levels (decreased MDA and ROS/RNS levels). Strikingly, at higher concentrations (>10 μg mL−1), Bixin showed increased lipid accumulation and oxidative stress. Bixin exhibits anti-obesity and anti-steatotic effects at lower doses, which correlates with its antioxidant properties. However, its bioactivity is dose-dependent, meaning that at higher concentrations, it ceases to inhibit adipogenesis. This opposing response is accompanied by elevated oxidative stress levels, indicating a pro-oxidant effect at higher doses, which suggests its anti-cancer potential. The present study highlights the significance of dosage optimization of nutraceuticals and dietary ingredients with respect to their intended biological applications, such as MetS and cancer treatment.
Arid/semi-arid flora as a treasure trove of bioactives and bioenergy: the case for underutilized desert legumes towards environmental sustainability
(Springer, 2024) Deepa, P.R.; Sharma, Pankaj Kumar
As the spectre of climate change gains in strength with each passing moment, many of our mundane food crops like rice face the heat, leading to uncertain yields and unforeseen disease outbreaks. Subsequently, mankind is forced to look for alternative food choices that should primarily come from indigenous plants that are less demanding in terms of usage of water and application of chemical-based fertilizers/pesticides. There are plants growing in the wild in the arid and semi-arid zones of Rajasthan, India, that can come to the rescue, with an added potential for development into valuable functional foods—i.e., not only as source of carbohydrates, proteins, and micro-nutrients but also that of health benefiting nutraceuticals (like antioxidant flavonoids) and relevant enzymes. The other parts (non-edible) of these plants have often also been traditionally validated via diverse ethnomedicinal practices; these could also be useful bioenergy sources. Keeping in mind the broader aim of looking at future functional foods that are also required to be environmentally sustainable, the current report: (a) reviews the extant literature on underutilized legumes from arid/semi-arid zones, (b) discusses current status with respect to biological activities present therein, and (c) suggests pertinent research questions and solution paths in the domains of bioactives, bioenergy, and sustainable environment.
Bioactivity-guided purification and characterization of antioxidant, anti-gout and anti-diabetic polyphenols from Panchkuta: a traditional food combination of (semi) arid regions
(Elsevier, 2024-12) Deepa, P.R.; Sharma, Pankaj Kumar
Desert ecosystems have thrived in part because of the contribution of local traditions, along with conventional knowledge passed down through generations. Panchkuta, a combination of five plants, including Prosopis cineraria, Cordia dichotoma, Capparis decidua, Acacia senegal, and Mangifera indica, is a classic example of ethnic desert food and how communities utilize existing food resources to ensure nutritional security. In this study, we determined the total phenolic content, total flavonoid content, antioxidant, anti-gout, and anti-diabetic activities of crude and purified (using Amberlite XAD7HP and Sephadex LH-20) fractions of Panchkuta. Further, the phenolic compounds (quercetin, tiliroside, myricetin-3-O-galactoside, and others) responsible for these activities were identified by analytical techniques, including TLC, LC-MS, and HR-MS. The purified fraction showing maximum antioxidant activity in DPPH assay (Fraction 16, IC50–156.65 ± 12.6 μg/ml) was validated for its cytoprotective and anti-lipid peroxidative effects in the in vitro cell culture system (murine fibroblast cells). Fraction 9 showed the maximum anti-gout activity in xanthine oxidase assay (IC50- 80.59 ± 9.89 μg/ml) and fraction 11 showed the maximum anti-diabetic activity in α-amylase assay (IC50 of 101.54 ± 14.7 μg/ml). The study reinforces the understanding of traditional knowledge, relevance to One Health, and authenticates the potential medicinal value of Panchkuta through scientific validation.
Chromatographic analysis of bioactive metabolites from a traditional food combination of (semi) arid regions—panchkuta: insights for sustainable functional foods development
(MDPI, 2024-10) Sharma, Pankaj Kumar; Deepa, P.R.
Conventional agriculture may not meet the needs of the growing human population and sustainable development. These issues necessitate a shift towards traditional foods and underutilized desert plants, offering promising sustainable agricultural and food security alternatives. ‘Panchkuta’, a blend of five plants (Prosopis cineraria, Acacia senegal, Capparis decidua, Cordia dichotoma, and Mangifera indica), is a traditional food combination from (semi) arid regions. In this study, the bioactive metabolites were identified through analytical techniques, including TLC and GC-MS analysis. Tapping these underexplored plants can help design and develop healthy functional foods and nutraceutical products.
Comparative bioactivity assessment of bixin pigment and associated phytochemicals extracted from annatto seeds using conventional and green solvents
(JFDA, 2024-06) Sharma, Pankaj Kumar; Deepa, P.R.
Nutraceuticals, that include food ingredients and bioactives from natural products, confer physiological health benefits and protection against chronic diseases. Annatto is a tropical shrub grown in Central and South America and parts of India. Its seeds are rich in the edible carotenoid-derived apocarotenoid pigment, bixin, which is used as a natural colorant in food, textiles, and cosmetics, and is now gaining attention for its potential health-promoting attributes. Here, we compared a green solvent (ethyl lactate) based extraction of bixin and associated metabolites in annatto seeds (crushed and seed coat) with two other conventional solvents (acetone and acid-base). Bixin was characterized in the extracts using UV-visible- and FTIR- spectroscopy and thin-layer chromatography. The bixin-containing solvent extracts were then profiled for other co-existing metabolites using GC-MS analysis, which were found to be sesquiterpenes, terpenes, terpenoids, phytosterols, and tocotrienols. Their bioactivity was evaluated based on antioxidant and wound-healing efficacies and compared with pure bixin, using NIH-3T3 fibroblast cells in-vitro. Pure bixin, as well as the annatto solvent extracts, showed strong antioxidant and wound healing properties, wherein pure bixin and green solvent extract (ethyl lactate coat) exhibited higher levels of antioxidant activity, achieving 46.00% and 44.60% reduction in MDA levels, respectively, as well as enhanced wound-healing activity, with 54.09% and 53.60% wound closure within 24 h. The green solvent extracts of annatto seeds revealed: (a) differential bioactive profiles in annatto seeds (crushed and seed coat) in comparison with other solvents, and (b) strong antioxidant and wound healing properties. Thus, ethyl lactate extraction shows strong potential for sustainable environmental friendly production of functional foods/nutraceuticals from annatto seeds
Desert legume Prosopis cineraria as a novel source of antioxidant flavonoids / isoflavonoids: Biochemical characterization of edible pods for potential functional food development
(Elsevier, 2022-03) Deepa, P. R.; Sharma, Pankaj Kumar
Flavonoids and isoflavonoids in foods are attracting attention as they are significant antioxidant and phytoestrogenic compounds that are beneficial for human health. In this study, the edible pods of the underutilized desert legume Prosopis cineraria from Rajasthan, India were used to extract flavonoids. The pods from semi-arid zone showed the highest flavonoid content (432 mg Rutin hydrate/gm). UV spectrophotometric analysis was also done to characterize flavonoids. The flavonoids and isoflavonoids were further purified from semi-arid zone plants using column chromatography with Amberlite XAD7HP and Sephadex LH-20. LC-MS analysis revealed the presence of medicinally valuable antioxidant flavonoids and isoflavonoids in the pods, viz. vitexin, puerarin, phloridzin, and daidzein. It was seen that the flavonoids/isoflavonoids are present in the selected legume in different forms i.e. pure aglycone, C-glycoside as well as O-glycoside. This finding makes P. cineraria an attractive source candidate for extraction of these nutraceuticals with a potential for development into functional food.
Desert legumes as sustainable sources of proteins and bioactive peptides: Technological insights into functional food development from underutilized plants
(Elsevier, 2024-05) Sharma, Pankaj Kumar; Deepa, P.R.
This review explores the trends in consumption of dietary protein from (animal-based sources) and plant-based alternatives, particularly focusing on conventional as well as underutilized desert legumes. Acknowledging the essential role of proteins in cellular homeostasis, this report also underscores the risks associated with prolonged animal protein consumption. The rising popularity of plant-based proteins from legumes and their potential to address the global issue of malnutrition, along with the nutritional significance of legume-based proteins and bioactive peptides, is discussed in detail. Underutilized desert legumes, as sustainable protein sources, have the potential to offer promising health benefits and industrial applications like plant-based cheese and meat production. We have highlighted a few desert legumes- Prosopis cineraria, Cyamopsis tetragonoloba, Acacia senegal, Vigna aconitifolia and their potential to ensure global food security in the face of climate change. The underexplored legumes, often neglected due to limited knowledge about their benefits, hold resilient solutions to the growing demand for high quality protein. The review compares the protein quality of representative legumes, both conventional and overlooked, and highlights the need for the integration of desert legumes into mainstream agriculture and the technological challenges for functional food production. Several advantages of desert legumes are compromised by the presence of anti-nutritional factors (ANFs) in them causing sensory limitations and consumer unacceptability. These problems can be addressed by exploring physical processing techniques, microbial fermentation, and extrusion to eradicate ANFs. Application of novel technologies like 3-D printing and their potential for protein and peptide product development from underutilized desert legumes have also been emphasized.
Effect of different proportions of phenolics on antioxidant potential: Pointers for bioactive Synergy/Antagonism in foods and nutraceuticals
(Springer, 2022-07) Sharma, Pankaj Kumar; Deepa, P.R.
Phenolic compounds include a broad variety of antioxidant plant substances such as flavonoids that have in common an aromatic ring with one or more hydroxyl groups. Nutraceuticals and health food supplements are designed from flavonoids as well as pure phytochemicals, often in isolation. However, studies on synergistic and antagonistic effects of such compounds are relatively few. In the current study, dual combinations prepared from five phenolic compounds (flavonoid and non-flavonoid) including rutin hydrate, quercetin dihydrate, hydroquinone, kaempferol, and resveratrol were tested for their antioxidant activities using DPPH· radical scavenging assay. The synergistic antioxidant interactions among these phenolics were evaluated by comparing their individual antioxidant effect with that obtained by a mixture of two compounds in various ratios. Quercetin dihydrate showed the highest antioxidant activity. Many combinations were found statistically synergistic in particular ratios. Rutin hydrate and resveratrol showed maximum synergy (1:1, 2:1, and 3:1 ratio). Antagonistic interactions were also identified. The results of this study could be used by industries to develop more potent nutraceutical supplements or guide the researchers for further bioactivity validation using in vivo assays.
Fink’s Integrated Course Design and Taxonomy: The Impact of Their Use in an Undergraduate Introductory Course on Bioinformatics
(Springer, 2024-03) Chowdhury, Shibasish; Sharma, Pankaj Kumar
The Integrated Course Design (ICD), using Fink’s taxonomy of significant learning, popularly known as ICD/SL, is a handy way to create a better learning environment for students. It is a learner-centered approach with the desired end-product, but at the same time, it upgrades the teaching by improving the instructors’ delivery mechanism. Our goal of this study was to see whether ICD/SL affects students’ class participation and academic performance in the “Introduction to Bioinformatics” course offered at the Department of Biological Science, BITS Pilani, Pilani campus, India. Three class groups were chosen for this purpose: 2019–2020 (51 students), 2020–2021 (77 students), and 2021–2022 (72 students). The control group, 2019–2020, received no ICD/SL instruction; the remaining two groups, 2020–2021 and 2021–2022, received ICD/SL instruction that included revised learning goals based on Fink’s taxonomy and new teaching and evaluation activities. A Likert scale was utilized to assess students’ academic feedback using the Kruskal–Wallis test to determine the P-value. The findings showed that the treatment groups had higher class participation and academic performance in the summative assessment of final grades. In the experimental groups, the class participation was 23 to 27% higher compared to the control group. The absenteeism rate on the course decreased from 14% in 2019–2020 to 9% in 2020–2021 and 4% in 2021–2022. Also, in the treatment groups, 83 to 90% of students were in the High to Excellent category, compared to 74% in the control group. The failure rate of the course decreased from nearly 18 to 10% in 2021–2022 and only 6% in 2020–2021. There were significant differences between the treatment and control groups in class participation and academic performance (P < 0.05). This study has shown that the use of ICD/SL has the potential to improve students’ class participation and academic performance.
In silico and in vitro analysis of PPAR – α / γ dual agonists: Comparative evaluation of potential phytochemicals with anti-obesity drug orlistat
(Elsevier, 2022) Deepa, P.R.; Sharma, Pankaj Kumar; Murugesan, Sankaranarayanan
Obesity is an abnormal fat accumulation disorder in the metabolic syndrome constellation, and a risk factor for diabetes, cardiovascular disorders, non-alcoholic fatty liver disease (NAFLD), and cancer. Nuclear receptors (Peroxisome proliferator-activated receptor, PPAR) are implicated in metabolic syndrome and NAFLD, and have potential for therapeutic targeting. Nuclear receptors are ligand-dependent transcription factors that have diverse roles in metabolism, including regulating genes involved in lipid and glucose metabolism, modulating inflammatory genes, and are crucial for maintaining metabolic flexibility. PPAR activates adipose triglyceride lipase, which then releases fatty acids as ligands for PPAR, indicating the interdependency of nuclear receptors and lipases. Here, molecular docking was performed with selected phytochemical ligands that can bind with PPAR-α/γ (PDB ID: 2ZNN and 2ATH, respectively) using Glide module of Schrodinger software followed by molecular dynamics simulation study using Desmond module, and ADMET analysis. Interestingly, orlistat which is a well-known lipase and fatty acid synthase inhibitor also demonstrated favorable binding affinity with both PPAR-α/γ (−10.96 kcal/mol against PPARα and −10.26 kcal/mol against PPARγ). The highest docking scores were however shown by the flavonoids - rutin (−14.88 kcal/mol against PPARα and −13.64 kcal/mol against PPARγ), and its aglycone, quercetin (−10.08 kcal/mol in PPARα and −9.89 kcal/mol in PPARγ). The other phytochemicals (genistein, esculin, daidzin, naringenin, daidzein, dihydroxy coumarin, hydroquinone) showed lower binding affinity as dual agonists. The anti-obesity effects were experimentally validated in cultured adipocytes, which revealed better lipid inhibition by rutin and quercetin than orlistat (quercetin > rutin > orlistat) pointing to their strong potential in anti-obesity treatment.
In silico and in vitro investigations reveal pan-PPAR agonist activity and anti-NAFLD efficacy of polydatin by modulating hepatic lipid-energy metabolism
(Springer Nature, 2025) Sharma, Pankaj Kumar; Murugesan, Sankaranarayanan; Deepa, P.R.
Polydatin (PD), a stilbenoid resveratrol-derivative in Vitaceae, Liliaceae, and Leguminosae, exhibits pharmacological protection in metabolic disorders. This study investigated Polydatin, as a potential pan-PPAR agonist for treating non-alcoholic fatty liver disease (NAFLD). High-throughput-virtual-screening (HTVS) was performed to identify potential pan-PPAR agonists, followed by in vitro testing of Polydatin in HepG2 steatosis model. Effects on lipid metabolism and oxidative stress, PPAR signaling gene expression analysis, and GC-MS profiling were compared with the hepatoprotectant Silymarin. Pan-PPAR targeted HTVS of PhytoHub natural products database, followed by molecular docking/dynamics simulations, revealed lead-candidate, Polydatin, which was tested in steatotic cells for gene and protein deregulations by qRT-PCR and western blot, followed by GC-MS analysis of biochemical metabolites. HTVS revealed 53 potential pan-PPAR agonists. Molecular docking and dynamics simulations suggested that PD, a stable ligand for PPARs (α,β/δ,γ), exhibited strong binding. Polydatin treatment decreased ALT, triglycerides, and oxidative stress, wherein ROS and malondialdehyde levels decreased by 60.94% and 28%, respectively. PD upregulated PPARs, AMPK, GLUT2, and CPT1α, while downregulating lipogenic enzymes (ACC1, FASN, SCD1). GC-MS analysis revealed Polydatin mediated impact on saturated FFAs-palmitic acid, stearic acid, and unsaturated fatty acid product of SCD1, oleic acid. HTVS identified PD as a promising pan-PPAR agonist, which favorably ameliorated changes in lipid, glucose, and overall energy metabolism in steatotic NAFLD, by modulating PPAR(α,β/δ,γ) expressions and associated downstream lipogenic and lipid-utilization mechanisms, supporting anti-steatotic efficacy of Polydatin.
Investigating the antioxidant activity enhancer effect of Cyamopsis tetragonoloba seed extract on phenolic phytochemicals
(Frontiers, 2023-03) Sharma, Pankaj Kumar; Deepa, P. R.
Phenolic phytochemicals are known for antioxidant-mediated pharmacological effects in various diseases (diabetes, cancer, CVDs, obesity, inflammatory and neurodegenerative disorders). However, individual compounds may not exert the same biological potency as in combination with other phytochemicals. Cyamopsis tetragonoloba (Guar), an underutilized semi-arid legume which has been used as a traditional food in Rajasthan (India), is also a source of the important industrial product guar gum. However, studies on its biological activity, like antioxidant, are limited.
Matters of the desert: A perspective on achieving food and nutrition security through plants of the (semi) arid regions
(Elsevier, 2023-12) Deepa, P.R.; Sharma, Pankaj Kumar; Joshi, Mukul
The semi- and arid agro-climatic zones of India harbor numerous plants, many occurring as wild and neglected inhabitants of the desert landscape, that bear edible fruits. They are capable of growing in extreme temperatures, on marginal lands and water-scarce conditions. These also represent sustainable food sources for the future. The benefits that they confer to the ecosystems and communities can be manifold: (a) as influencers of agricultural productivity for other crops (like cereals) in agroforestry systems; (b) as balanced functional foods by way of providing high quality protein, macro- and micronutrients to target protein-calorie malnutrition; (c) as sources of antioxidants, nutraceuticals and bioactive leads to target the ever-increasing burden of non-communicable diseases like obesity, diabetes and cardiovascular disorders. A few representative examples of the promising desert plants include: Prosopis cineraria, Acacia senegal, Cyamopsis tetragonoloba (cluster bean), Capparis decidua, Ziziphus mauritiana (Indian jujube), Cordia dichotoma, Leptadenia pyrotechnica, Calligonum polygonoides, and millets. Even though the potential of such plants has been recognized by food and agricultural scientists, research gaps like low yield, disease vulnerability, presence of anti-nutrients, unavailable genomic sequence information, exclusion from the formal food value chain, and poor marketing strategies, prevent the realization of their full potential. The current perspective looks at the promise afforded by underutilized plants of the Indian desert regions in ensuring food and nutrition security as well as the possibility of developing value-added agri-food products from them. The complementary role that food processing technologies can play in achieving the desired goals would also be highlighted so as to transform the desert plants from traditional to ‘climate-smart’ future foods.
Measurement of antioxidant synergy between phenolic bioactives in traditional food combinations (legume/non-legume/fruit) of (semi) arid regions: insights into the development of sustainable functional foods
(Springer, 2024-02) Sharma, Pankaj Kumar; Deepa, P.R.
Numerous under-researched edible plants are present in the desert regions of the world. These plants could be potential candidates to ensure food security and provide valuable bioactive compounds through diet. In general, the bioactives present in food manifest synergistic, additive, or antagonistic interactions. The current study investigates such interactions between food combinations traditionally consumed in (semi) arid regions. Five edible plants (representing three food categories) were selected: Prosopis cineraria and Acacia senegal (legume), Capparis decidua and Cordia dichotoma (non-legume), and Mangifera indica (fruit), in which the first four are largely underutilized. The antioxidant capacities of individual plant extracts and their binary mixtures were analyzed by DPPH free radical scavenging and FRAP assays. The total phenolic content (TPC) and total flavonoid content (TFC) were also determined. The highest antioxidant activity was obtained for Prosopis cineraria extract (EC50—1.24 ± 0.02 mg/ml, FRAP value—380.58 ± 11.17 μM/g), while Mangifera indica exhibited the lowest antioxidant activity (EC50—2.54 ± 0.05 mg/ml, FRAP value—48.91 ± 4.34 μM/g). Binary mixture of Prosopis cineraria (legume) and Mangifera indica (fruit) manifested maximum synergy (experimental EC50—0.89 ± 0.01 mg/ml, theoretical EC50—3.79 ± 0.05 mg/ml). Correlation studies [Pearson’s correlation coefficient (r) and Principal component analysis (PCA)] showed a high correlation of TFC with DPPH and TPC with FRAP values. LC–MS analysis of methanolic plant extracts detected 43 phenolic compounds (including phenolic acids, flavonoids, and isoflavonoids), possibly responsible for the observed food synergy. For edible plants of the (semi) arid zones, this study is a first-of-its-kind and provides scientific validation to the traditional wisdom of consuming these foods together. Such indigenous food combinations derived from desert flora could offer valuable insights into development of sustainable functional foods and nutraceuticals.
ML-based technologies in sustainable agro-food production and beyond: Tapping the (semi) arid landscape for bioactives-based product development
(Elsevier, 2024-08) Joshi, Mukul; Deepa, P.R.; Sharma, Pankaj Kumar; Mahapatra, Tanmaya
The current era of rapid climate change necessitates greater emphasis on wild, often underutilized yet sturdy, edible plants that are capable of growing in harsh arid lands. When compared to more popular crops like rice, these are often of traditional significance and more region-specific; but needing less chemical fertilizers, pesticides and irrigation water, they can not only provide food and nutrition in a sustainable manner but also medicinally valuable compounds (nutraceuticals) to target various communicable and non-communicable diseases. These bioactive metabolites could also serve as markers for in-process quality control of herbal formulations and as metabolic biomarkers. Of late, a few of the common food crops across the world have benefited from the use of technological interventions, employing various Internet of Things (IoT) devices and sensors to collect data on the farm and conduct agro-food specific analytics. Machine Learning (ML) and deep learning (DL) have found application in numerous facets of agriculture, particularly in tasks such as yield prediction, disease detection, weed detection, crop recognition, and assessing crop quality at pre-harvest, harvest, and post-harvest stages. ML technology also has shown potential to be effectively employed at various stages of bioactives discovery, encompassing target identification, compound screening, lead discovery, as well as pre-clinical and clinical development phases. However, the usage of these modern technologies has been less explored in the desert plants of the world. The current article reviews a few available examples and highlights the potential of employing ML and DL technologies in edible plants of the world, with a focus on sustainable desert flora, for achievement of multidisciplinary objectives, that is, agro-food production, food safety and bioactives discovery.
Nature-inspired Enzyme engineering and sustainable catalysis: biochemical clues from the world of plants and extremophiles
(Frontiers, 2023-06) Sharma, Pankaj Kumar; Chowdhury, Shibasish; Deepa, P.R.
The use of enzymes to accelerate chemical reactions for the synthesis of industrially important products is rapidly gaining popularity. Biocatalysis is an environment-friendly approach as it not only uses non-toxic, biodegradable, and renewable raw materials but also helps to reduce waste generation. In this context, enzymes from organisms living in extreme conditions (extremozymes) have been studied extensively and used in industries (food and pharmaceutical), agriculture, and molecular biology, as they are adapted to catalyze reactions withstanding harsh environmental conditions. Enzyme engineering plays a key role in integrating the structure-function insights from reference enzymes and their utilization for developing improvised catalysts. It helps to transform the enzymes to enhance their activity, stability, substrates-specificity, and substrate-versatility by suitably modifying enzyme structure, thereby creating new variants of the enzyme with improved physical and chemical properties. Here, we have illustrated the relatively less-tapped potentials of plant enzymes in general and their sub-class of extremozymes for industrial applications. Plants are exposed to a wide range of abiotic and biotic stresses due to their sessile nature, for which they have developed various mechanisms, including the production of stress-response enzymes. While extremozymes from microorganisms have been extensively studied, there are clear indications that plants and algae also produce extremophilic enzymes as their survival strategy, which may find industrial applications. Typical plant enzymes, such as ascorbate peroxidase, papain, carbonic anhydrase, glycoside hydrolases and others have been examined in this review with respect to their stress-tolerant features and further improvement via enzyme engineering. Some rare instances of plant-derived enzymes that point to greater exploration for industrial use have also been presented here. The overall implication is to utilize biochemical clues from the plant-based enzymes for robust, efficient, and substrate/reaction conditions-versatile scaffolds or reference leads for enzyme engineering.
Nutraceutical and flavor profiles in underutilized desert legumes of India: gene editing strategies towards sustainable food development
(Springer, 2023-03) Joshi, Mukul; Deepa, P. R.; Sharma, Pankaj Kumar
Climate change has posed a challenge for food security all over the world in the form of fluctuating crop yields and novel disease outbreaks in plants. Human society’s overdependence on a few food crops does not seem a wise precedence. There are numerous underutilized/orphan/neglected legumes growing in the Indian desert regions that can come to the rescue and act as balanced and sustainable sources of nutrients and health-benefitting nutraceuticals. However, challenges such as low plant yield, unidentified metabolic pathways and off-flavor in the food products derived from them prevent the realization of their full potential. Conventional breeding techniques are too slow to achieve the desired modifications and cater to the sharply rising demand for functional foods. The novel gene editing tools like CRISPR-Cas provide more precise tool to manipulate the target genes with or without introduction of foreign DNA and therefore, have better chances to be accepted by governments and societies. The current article reports some of the relevant ‘gene editing’ success stories with respect to nutraceutical and flavor profiles in the popular legumes. It highlights gaps and future potential, along with areas requiring caution, in underutilized edible legumes of the Indian (semi) arid regions like Prosopis cineraria, Acacia senegal and Cyamopsis tetragonoloba.
Promising trends in agricultural practices towards food security: expanding the desert landscape and flora into mainstream farming
(Frontiers Media, 2025-11) Deepa, P.R.; Sharma, Pankaj Kumar
Rapid climate change and degrading quality of once-fertile agricultural lands makes it imperative to turn attention towards marginal and desert lands for practice of farming. Additionally, wild xerophytes (desert plants) have been successfully thriving on such lands of extreme temperatures and water scarcity, and provide important clues for traits desired in food crops (such as stress tolerance). In past, the local human communities have derived nutrition from the underexplored (semi)arid plants during drought and famine. Latest technological innovations like application of clay nanoparticles and xerophyte-derived rhizobacteria, vertical farming, horticulture crop-based site management, and restoration of degraded agricultural lands using native and climate-resilient plant varieties offer a glimpse of hope. Therefore, (i) farming of popular food crops (like Solanum lycopersicum using techniques like drip irrigation) on desert lands, as well as, (ii) bringing desert plants (such as the superior varieties of tree legumes like Prosopis cineraria) into mainstream agriculture are two approaches that have shown promise. These actions would also align with the UN Sustainable Development Goals, viz.: SDG 2 (Zero hunger), SDG 12 (Responsible consumption and production) and SDG 13 (Climate action) in particular. Through the current article, we intend to highlight recent success stories on desert landscapes/plants and present the way forward for sustainable agriculture in future.
Silent metabolism and not-so-silent biological activity: possible molecular mechanisms of stress response in edible desert legumes
(Springer, 2021-11) Sharma, Pankaj Kumar; Deepa, P.R.
In the arid/semi-arid regions of India, there are many legumes often growing in the wild like Prosopis cineraria, Cyamopsis tetragonoloba and Acacia senegal. These legumes accumulate useful metabolites, often as glycosides, such as flavonoids and isoflavonoids under conditions of stress like heat and low rainfall. When required, some of these metabolites are produced by the activity of glycoside hydrolase enzymes like β-glucosidase rather than de novo biosynthesis. Local human populations have been consuming food prepared from the edible portions of these plants since ancient tradition. However, studies on phytochemical-cum-metabolic aspects are surprisingly limited in these plants—these being important parameters for developing them into scientifically-validated holistic health foods. It is important that this task is carried out for indigenous plants with useful antioxidant-guided medicinal properties rather than always depending upon expensive and imported exotic foods. The current article highlights research insights and perspectives from our work on edible desert legumes as well as those of other international research groups active in this area, particularly pertaining to flavonoids and their metabolism in planta. A few possible research goals for legume plant scientists are also suggested.