Department of Chemistry
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Item Steric interactions between mobile ligands facilitate complete wrapping in passive endocytosis(APS, 2018-09) Jana, Pritam KumarReceptor-mediated endocytosis is an ubiquitous process through which cells internalize biological or synthetic nanoscale objects, including viruses, unicellular parasites, and nanomedical vectors for drug or gene delivery. In passive endocytosis the cell plasma membrane wraps around the “invader” particle driven by ligand-receptor complexation. By means of theory and numerical simulations, here we demonstrate how particles decorated by freely diffusing and nonmutually interacting (ideal) ligands are significantly more difficult to wrap than those where ligands are either immobile or interact sterically with each other. Our model rationalizes the relationship between uptake mechanism and structural details of the invader, such as ligand size, mobility, and ligand-receptor affinity, providing a comprehensive picture of pathogen endocytosis and helping the rational design of efficient drug delivery vectors.Item Irreversible transition of amorphous and polycrystalline colloidal solids under cyclic deformation(APS, 2018-12) Jana, Pritam KumarCyclic loading on granular packings and amorphous media leads to a transition from reversible elastic behavior to an irreversible plasticity. In the present study, we investigate the effect of oscillatory shear on polycrystalline and amorphous colloidal solids by performing molecular dynamics simulations. Our results show that close to the transition, both systems exhibit enhanced particle mobility, hysteresis, and rheological loss of rigidity. However, the rheological response shows a sharper transition in the case of the polycrystalline sample as compared to the amorphous solid. In the polycrystalline system, we see the disappearance of disclinations, which leads to the formation of a monocrystalline system, whereas the amorphous system hardly shows any ordering. After the threshold strain amplitude, as we increase the strain amplitude both systems get fluid. In addition to that, particle displacements are more homogeneous in the case of polycrystalline systems as compared to the amorphous solid, mainly when the strain amplitude is larger than the threshold value. We do not see any effect of oscillation frequency on the reversible-irreversible transition.