Department of Chemistry
Permanent URI for this collectionhttp://localhost:4000/handle/123456789/1924
Browse
3 results
Search Results
Item Chemoselectivities in Acetalization, Thioacetalization, Oxathioacetalization and Azathioacetalization(ACS, 2006) Roy, Ram KinkarIn the present article (experimental as well theoretical) the relative yields of cyclic (O,O), (S,S), (S,O), and (S,N) acetals, formed from p-(NO2)C6H4CHO and p-(OH)C6H4CHO, are compared. Atomic charges, global electrophilicity descriptor (w) [as proposed by Parr et al., J. Am. Chem. Soc.1999, 121, 1922] and hard−soft acid−base concept of Pearson (J. Am. Chem. Soc.1963, 85, 3533) are used to explain the experimental observations. Although the w values can explain the yields, charge and local softness values of the interacting sites explain the plausible reaction mechanism. The bisnucleophiles chosen for acetalization are CH2(OH)−CH2(OH) (glycol), CH2(SH)−CH2(SH) (dithiol), CH2(OH)−CH2(SH) (oxathiol) and CH2(SH)−CH2(NH2) (azathiol). For p-(NO2)C6H4CHO, the experimental yield of cyclic acetals were found to follow the trend as (S,N) > (S,O) > (O,O) > (S,S), which is also supported by theoretical explanation based on the w values and applying the concept of hard−hard (i.e., charge-controlled) and soft−soft (i.e., orbital-controlled) interaction between the interacting sites of the substrates (i.e., aldehydes) and the reactants (bisnucleophiles). Similarly, for p-(OH)C6H4CHO the relative yields of cyclic acetals follow the trend (S,N) ≈ (S,S) > (S,O) > (O,O). It is argued that the attack on CCHO (i.e., C-atom of the CHO group) in p-(NO2)C6H4CHO by OOH (i.e., O-atom of OH group) or NNH2 (i.e., N-atom of NH2 group) is mainly charge-controlled but the attack on CCHO in p-(OH)C6H4CHO) by SSH (i.e., S-atom of SH group) is orbital-controlled.Item ONIOM Studies of Chemical Reactions on Carbon Nanotube Tips: Effects of the Lower Theoretical Level and Mutual Orientation of the Reactants(ACS, 2003-08-06) Roy, Ram KinkarWe studied theoretically the interaction of simple aliphatic amines with carboxylated zigzag and armchair single-walled carbon nanotube (SWNT) models. We used single-level MM+ molecular mechanics and the AM1 semiempirical method to study noncovalent interactions. To study the model amidation reaction with methylamine, the two-level ONIOM technique was employed in which the higher level was treated with B3LYP/6-31G(d) DFT, and the lower level was described with either universal force field (UFF) molecular mechanics or AM1. In the single-level calculations, the molecular mechanics strongly overestimated van der Waals interactions of amine molecules with the nanotube walls whereas totally ignored hydrogen bond formation between NH2 and COOH groups. On the contrary, AM1 calculations produced unrealistic hydrogen-bonded structures where no attraction was manifested between the hydrophobic fragments. In the ONIOM calculations at the B3LYP/6-31G(d):UFF level of theory, CH3 group of methylamine was strongly attracted to the nanotube, and its N−C bond was directed toward SWNT's center of mass in reaction complex, transition state, and product. Correspondingly, free rotation around C−C(O)O bond was hampered, which resulted in the existence of two series of isomers, depending on where the methylamine moiety is located, inside or outside the nanotube cavity. At the B3LYP/6-31G(d):AM1 level of theory, attraction between the hydrophobic moieties was very weak or absent, and both “inside” and “outside” starting geometries resulted in very similar reaction complexes, with the N−C bond of methylamine turned outward the nanotube. In addition to that, problems were found in the optimizations requiring force-constant calculations (transition states and vibrational frequencies). In all the ONIOM calculations, the formation of amide derivatives on carboxylated armchair SWNT tips was more energetically preferable than that on the zigzag nanotubes. In addition, in some cases of the “inside” zigzag isomers the reaction was endothermic, whereas it was always exothermic for their armchair models. To study theoretically chemical reactions on carbon nanotube tips by ONIOM technique, where the higher level is treated with B3LYP density functional theory, we recommend UFF molecular mechanics versus the AM1 semiempirical method for the lower-level description. To avoid artifacts associated with wall effects inside the nanotube cavity (such as unrealistically long N−H···O separations, which are supposed to be hydrogen bonds in reaction complexes), the use of nanotube diameters close to the commonly observed SWNT diameters is recommended.Item Validation of Hammett’s Linear Free Energy Relationship Through an Unconventional Approach(ACS, 2020) Roy, Ram KinkarThe present study tries to validate Hammett’s linear free energy relationship through an unconventional approach based on the density functional reactivity theory (DFRT). A kinetic energy component [ΔEB(A)], derived from the DFRT-based comprehensive decomposition analysis of stabilization energy scheme, is used to verify the linear nature of Hammett’s log(kX/kH) versus σ plot. The study shows that the versus σ plot (where −X is the atom or group substituted in place of −H) is linear in nature (with reasonably high correlation coefficient values) for different series of reactions. The slopes of the plots also reveal the electrophilic or nucleophilic nature of the transition states as is obtained from the conventional log(kX/kH) versus σ plot. The study thus establishes that the DFRT-based energy component ΔEB(A) (which is very easy to compute) can be used, instead of k-values, obtained either from the experiment or from computationally intensive conventional thermochemistry calculations to generate reliable Hammett’s plot.